Publications – Landscapegenomics

2024

Mulimbwa N’sibula T, Gordó-Vilaseca C, Milec LJM, Patel DM, Kankonda BA, Micha J-C. Sarvala J & Raeymaekers JAM. (2024). Growth parameters of the clupeids Limnothrissa miodon and Stolothrissa tanganicae in northern Lake Tanganyika (Bujumbura sub-basin). Belgian Journal of Zoology 154: 117–137. https://doi.org/10.26496/bjz.2024.184
Rbbani G, Murshed R, Siriyappagouder P, Sharko F, Nedoluzhko A, Joshi R, Galindo-Villegas J, Raeymaekers JAM and Fernandes JMO (2024), Embryonic temperature has long-term effects on muscle circRNA expression and somatic growth in Nile tilapia. Frontiers in Cell and Developmental Biology 12: 1369758. https://doi.org/10.3389/fcell.2024.1369758
Kokarev V, Dufour SC, Raeymaekers JAM, Mailli AM, Reiss H. (2024). Thyasirid species composition (Bivalvia: Thyasiridae) and genetic connectivity of Parathyasira equalis (A. E. Verrill & K. J. Bush, 1898) in deep basins of sub-Arctic fjords. BMC Ecology & Evolution 24: 91. https://doi.org/10.1186/s12862-024-02278-3
Peter B. Pearman, Olivier Broennimann, Tsipe Aavik, Tamer Albayrak, Paulo Célio Alves, F. A. Aravanopoulos, Laura D. Bertola, Aleksandra Biedrzycka, Elena Buzan, Vlatka Cubric-Curik, Mihajla Djan, Ancuta Fedorca, Angela P. Fuentes-Pardo, Barbara Fussi, José A. Godoy, Felix Gugerli, Sean Hoban, Rolf Holderegger, Christina Hvilsom, Laura Iacolina, Belma Kalamujic Stroil, Peter Klinga, Maciej K. Konopiński, Alexander Kopatz, Linda Laikre, Margarida Lopez Fernandez, Barry John McMahon, Joachim Mergeay, Charalambos Neophytou, Snæbjörn Pálsson, Ivan Paz-Vinas, Diana Posledovich, Craig Primer, Joost A. M. Raeymaekers, Baruch Rinkevich, Barbora Rolečková, Dainis Ruņģis, Laura Schuerz, Gernot Segelbacher, Katja Kavčič Sonnenschein, Milomir Stefanovic, Henrik Thurfjell, Sabrina Träger, Ivaylo N. Tsvetkov, Nevena Velickovic, Philippine Vergeer, Cristiano Vernesi, Carles Vilà, Marjana Westergren, Frank E. Zachos, Antoine Guisan, Michael Bruford (2024). Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts. Nature Ecology & Evolution 8, 267-281. https://doi.org/10.1038/s41559-023-02260-0

2023

Heuertz M, Carvalho SB, Galindo J, Rinkevich B, Robakowski P, Aavik T, Altinok I, Bart JMI, Cotrim H, Goessen R, González-Martínez SC, Gebrenc T, Hoban S, Kopatz A, McMahon BJ, Porth I, Raeymaekers JAM, Träger S, Valdecantos A, Vella A, Vernesi C & Garnier-Géré P (2023). The application gap: genomics for biodiversity and ecosystem service management. Biological Conservation 278, 109883. https://doi.org/10.1016/j.biocon.2022.109883
Shankregowda AM, Siriyappagouder P, Kuizenga M, Bal TMP, Abdelhafiz Y, Eizaguirre C, Fernandes JMO, Kiron V & Raeymaekers JAM (2023). Host habitat rather than evolutionary history explains gut microbiome diversity in sympatric stickleback species. Frontiers in Microbiology 14, 1232358. https://doi.org/10.3389/fmicb.2023.1232358
Beausoleil M-O, Carrión PL, Podos J, Camacho C, Rabadán-González J, Richard R, Lalla K, Raeymaekers JAM, Knutie SA, De León LF, Huber SK, Chaves JA, Clayton DH, Koop JAH, Sharpe DMT, Gotanda KM, Huber SK, Barrett RDH & Hendry AP (2023). The fitness landscape estimated for a community of Darwin’s finches. Evolution 77, 2533-2546. https://doi.org/10.1093/evolut/qpad160
Sharko F, Rbbani G, Siriyappagouder P, Raeymaekers JAM, Galindo-Villegas J, Nedoluzhko A & Fernandes JMO (2023). CircPrime: a web-based platform for design of specific circular RNA primers. BMC Bioinformatics 24, 205. https://doi.org/10.1186/s12859-023-05331-y
Wagner CI, Bal TMP, Brinchmann MF, Noble LR, Raeymaekers JAM & Bjørnevik M (2023). The concept map as a substitute for lectures: effects on student performance and mental health. Cogent Education 10, 2218154.
Rbbani G, Nedoluzhko A, Siriyappagouder P, Sharko F, Galindo-Villegas J, Raeymaekers JAM, Joshi R & Fernandes JMO (2023). The novel circular RNA CircMef2c is positively associated with muscle growth in Nile tilapia. Genomics 115, 110598. https://doi.org/10.1016/j.ygeno.2023.110598

2022

Deflem IS, Calboli FCF, Christiansen H, Hellemans B, Raeymaekers JAM & Volckaert FAM (2022). Contrasting population genetic responses to migration barriers in two native and an invasive freshwater fish. Evolutionary Applications 15, 2010–2027. https://doi.org/10.1111/eva.13469
Carrión PL, Raeymaekers JAM, De León LF, Chaves JA, Sharpe DMT, Huber SK, Herrel A, Vanhooydonck B, Gotanda KM, Koop JAH, Knutie SA, Clayton DH, Podos J, Hendry AP (2022) The terroir of the finch: How spatial and temporal variation shapes phenotypic traits in Darwin’s finches. Ecology and Evolution 12 (10), 1-16. DOI: https://doi.org/10.1002/ece3.9399
Mulimbwa N, Milec LJM, Raeymaekers JAM, Sarvala J, Plisnier P-D, Marwa B & Micha J-C (2022). Spatial and seasonal variation in reproductive indices of the clupeids Limnothrissa miodon and Stolothrissa tanganicae in the Congolese waters of northern Lake Tanganyika. Belgian Journal of Zoology 152, 13–31. https://doi.org/10.26496/bjz.2022.96
Santangelo JS, Ness RW, Cohan B, […], Raeymaekers JAM, et al. (2022). Global urban environmental change drives adaptation in white clover. Science 375, 1275-1281. DOI: 10.1126/science.abk0989
Deflem IS, Van Den Eeckhaut F, Vandevoorde M, Calboli FCF, Raeymaekers JAM & Volckaert FAM (2022). Environmental and spatial determinants of parasite communities in invasive and native freshwater fishes. Hydrobiologia 849, 913–928. https://doi.org/10.1007/s10750-021-04746-z
Bruijning M, Fossen EIF, Jongejans E, Vanvelk H, Raeymaekers JAM, Govaert L, Brans K, Einum S & De Meester L (2022). Host-parasite dynamics shaped by temperature and genotype: quantifying the role of underlying vital rates. Functional Ecology 36, 485–499. DOI: 10.1111/1365-2435.13966
Milec LJM, Vanhove MPM, Muterezi Bukinga F, De Keyzer ELR, Lumami Kapepula V, Masilya Mulungula P, Mulimbwa N, Wagner CE & Raeymaekers JAM (2022). Complete mitochondrial genomes and updated divergence time of the two freshwater clupeids endemic to Lake Tanganyika (Africa) suggest intralacustrine speciation. BMC Ecology & Evolution 22, 127. https://doi.org/10.1186/s12862-022-02085-8
Thorburn DMJ, Bal TMP, Deflem IS, Volckaert FAM, Eizaguirre CE & Raeymaekers JAM (2022). Context-dependent parasite infection affects trophic niche in populations of sympatric stickleback species. Parasitology 149, 1164–1172. https://doi.org/10.1017/S0031182022000531

2021

Fossen EIF, Raeymaekers JAM & Einum S (2021). Do genetic differences in growth thermal reaction norms maintain genetic variation in timing of diapause induction? Freshwater Biology. DOI: 10.1111/fwb.13825
Calboli FCF, Delahaut V, Deflem IS, Hablützel PI, Hellemans B, Kordas A, Raeymaekers JAM, Bervoets L, De Boeck G & Volckaert FAM (2021). Association between Chromosome 4 and mercury accumulation in muscle of the three-spined stickleback (Gasterosteus aculeatus). Evolutionary Applications. DOI: 10.1111/eva.13298
Chaturvedi A, Zhou J, Raeymaekers JAM, Czypionka T, Orsini L, Jackson CE, Spanier K, Shaw JR, Colbourne JK, De Meester L (2021). Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia. Nature Communications 12, 4306.
Deflem I, Bennetsen E, Opedal Ø, Calboli FCF, Ovaskainen O, Van Thuyne G, Volckaert FAM & Raeymaekers JAM (2021). Predicting fish community responses to environmental policy targets. Biodiversity and Conservation 30, 1457–1478.
Bal TMP, Llanos-Garrido A, Chaturvedi A, Verdonck I, Hellemans B & Raeymaekers JAM (2021). Adaptive divergence under gene flow along an environmental gradient in two coexisting stickleback species. Genes 2021, 12, 435. https://doi.org/10.3390/genes12030435

2020

De Keyzer E, Pascal M Masilya, Alunga L Georges, Christian M Amisi, Armand M Andema, Kwibe Assani, Prosper Bashengezi, Alexis B Bashonga, Abel R Bashonga, Béni L Hyangya, Christian K Itulamya, Jean Hugé, Christian Hulamya, Huyghe CET, Luc Janssens de Bisthove, Josué B Kakogozo, Sandrine S Kamakune, Heritier Kamalebo, Innocent K Kiriza, Papy D Lubunga, Vercus K Lumami, Fazili Lwacha, Jacques L Mazambi, Milec LJM, N’sibula Mulimbwa, Archimède M Mushagalusa, Fidel B Muterezi, Donatien R Muzumani, Noëlla B Nabintu, Jean-Paul K Ntakobajira, Raeymaekers JAM, Jacques W Riziki, Ruffin R Safari, Vanhove MPM, Volckaert FAM, Oscar N Wembo & Maarten Van Steenberge (2020). Local perceptions on the state of fisheries and fisheries management at Uvira, Lake Tanganyika, DR Congo. Journal of Great Lakes Research 46, 1740-1753.
Vandamme S, Raeymaekers JAM, Maes GE, Cottenie K, Calboli FCF, Diopere E & Volckaert FAM. Reconciling seascape genetics and fisheries science in three co-distributed flatfishes. Evolutionary Applications 14, 536–552.
Kmentová N, Koblmüller S, Van Steenberge M, Raeymaekers JAM, Artois T, De Keyzer ELR, Milec L, Muterezi Bukinga F, Mulimbwa N, Mulungula PM, Ntakimazi G, Volckaert FAM, Gelnar M & Vanhove MPM (2020). Weak population structure and recent demographic expansion of the monogenean parasite Kapentagyrus spp. infecting clupeid fishes of Lake Tanganyika, East Africa. International Journal for Parasitology 50, 471-486.
Peeters B, Le Moullec M, Raeymaekers JAM, Marquez JF, Røed KH, Pedersen ÅØ, Veiberg V, Loe LE & Hansen BB (2020). Sea ice loss increases genetic isolation in a high Arctic ungulate metapopulation. Global Change Biology 26, 2028– 2041.
Sagonas K, Karameta E, Kotsakiozi P, Poulakakis N (2020). Cross-species testing of nuclear markers in Pelophylax water frogs in Greece and examination of their power to detect genetic admixture. Amphibia-Reptilia 41, 253-259.
Sagonas K, Meyer BS, Kaufmann J, Lenz TL, Häsler R, Eizaguirre C (2020). Experimental parasite infection causes genome-wide changes in DNA methylation. Molecular Biology and Evolution, msaa084.
Choo LQ, Bal TMP, Choquet M, Smolina I, Ramos-Silva P, Marlétaz F, Kopp M, Hoarau G, Peijnenburg KTCA (2020). Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance. BMC Genomics 21, art. no. 11.
Choo LQ, Bal TMP, Goetze E, Peijnenburg KTCA (2020). Oceanic dispersal barriers in a holoplanktonic gastropod. Journal of Evolutionary Biology, Special Issue. DOI: 10.1111/jeb.13735
N Chaturvedi, K Ahmad, BS Yadav, EJ Lee, SC Sonkar, NM Marina, I Choi (2020). Understanding Calcium-Dependent Conformational Changes in S100A1 Protein: A Combination of Molecular Dynamics and Gene Expression Study in Skeletal Muscle. Cells. 10. pii: E181. doi: 10.3390/cells9010181
PK Yadav, SK Gupta, S Kumar, M Ghosh, BS Yadav, D Kumar, A Kumar, M Saini, M Kataria (2020). IL-18 immunoadjuvanted xenogeneic canine MMP-7 DNA vaccine overcomes immune tolerance and supresses the growth of murine mammary tumor. International Immunopharmacology, 7, 106370.
PK Yadav, SK Gupta, S Kumar,M Ghosh, BS Yadav, D Kumar, A Kumar, M Saini, M Kataria (2020). MMP-7 derived peptides with MHC class-I binding motifs from canine mammary tumor tissue elicit strong antigen-specific T-cell responses in BALB/c mice. Molecular and Cellular Biochemistry, 24, 1-10.
RK Singh, BS Yadav, TM Mohapatra (2020). Molecular targets and system biology approaches for drug repurposing against SARS-CoV-2. Bulletin of the National Research Centre, 44, 193.
Kulmuni J, Butlin RK, Lucek K, Savolainen V, Westram AM (2020). Towards the completion of speciation: the evolution of reproductive isolation beyond the first barriers. Philosophical Transactions of the Royal Society B 375, 20190528.
Stankowski S, Westram AM, Zagdrodzka ZB, Eyres I, Broquet T Johannesson K, Butlin RK (2020). The evolution of strong reproductive isolation between sympatric intertidal snails. Philosophical Transactions of the Royal Society B 375, 20190545.
Perini S, Rafajlovic M, Westram AM, Johannesson K, Butlin RK (2020). Assortative matin, sexual selection and their consequences for gene flow in Littorina. Evolution 74, 1482-1497.
Berdan EL, Blanckaert A, Slotte T, Suh A, Westram AM, Fragata I (2020). Unboxing muttations: connceting mutation types with evolutionary consequences. arXiv preprint: 2009.13830.
Johannesson K, Zagdrodzka Z, Faria R, Westram AM, Butlin RK (2020). Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? Journal of Evolutionary Biology 33, 342-351.
Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK (2020). A developmentally descriptive method for quantifying shape in gastropod shells. Journal of the Royal Society Interface 17, 20190721.
Westram AM, Faria R, Butlin RK, Johannesson K (2020). Inversions and evolution. eLS, DOI: 10.1002/9780470015902.a0029007

2019

Delerue-Ricard S, Darnaude AM, Raeymaekers JAM, Dundas SH, Skadal J, Volckaert FAM & Geffen AJ (2019). Extensive larval dispersal and restricted movement of juveniles on the nursery grounds of sole in the Southern North Sea. Journal of Sea Research 155, 101822.
Beausoleil M-O, Frishkoff LO, M’Gonigle LK, Raeymaekers JAM, Knutie SA, De León LF, Huber SK, Chaves JA, Clayton DH, Koop JAH, Podos J, Sharpe DMT, Hendry AP & Barrett RDH (2019). Temporally varying disruptive selection in Darwin’s finches. Proceedings of the Royal Society B 286, 20192290.
Brunner FS, Deere JA, Egas M, Eizaguirre CE & Raeymaekers JAM (2019). The diversity of eco-evolutionary dynamics: comparing the feedbacks between ecology and evolution across scales. Functional Ecology 33, 7-12.
De Keyzer ELR, De Corte Z, Van Steenberge M, Raeymaekers JAM, Calboli FCF, Kmentová N, Mulimbwa N, Virgilio M, Vangestel C, Mulungula PM, Volckaert FAM & Vanhove MPM (2019). First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species. BMC Evolutionary Biology 19, 6.
Govaert L, Fronhofer EA, Lion S, Eizaguirre CE, Bonte D, Egas M, Hendry AP, Martins AB, Melián CJ, Raeymaekers JAM, Ratikainen II, Saether B-E, Schweitzer JA & Matthews B (2019). Eco-evolutionary feedbacks – theoretical models and perspectives. Functional Ecology 33, 13-30.
De León LF, Sharpe DMT, Gotanda K, Raeymaekers JAM, Chaves JA, Hendry AP & Podos J (2019). Urbanization erodes niche segregation in Darwin’s finches. Evolutionary Applications.
Rey O, Eizaguirre C, Angers B, Baltazar-Soares M, Sagonas K, Prunier JM, Blanchet S (2019) Linking epigenetics and biological conservation: Towards a conservation epigenetics perspective. Epigenetics in Ecology and Evolution 34, 414-427.
Sagonas K, Pafilis P, Lymberakis P, Valakos ED (2019). Sexual maturation and reproduction of the Balkan green lizard Lacerta trilineata specimens in mainland and island populations from Greece. North-western Journal of Zoology 15, 55-61.
Sagonas K, Runemark A, Antoniou A, Lymberakis P, Pafilis P, Valakos ED, Poulakakis N, Hansson B (2019). Selection, drift, and introgression shape MHC polymorphism in lizards. Heredity 122, 468-484.
Faria R , Johannesson K, Butlin RK, Westram AM (2020). Evolving inversions. Trends in Ecology and Evolution 34, 239-248.
Faria R, Chaube P, Morales HE, Larsson T, Lemmon AR, Lemmon EM, Rafajlovic M, Panova M, Ravinet M, Johannesson K, Westram AM, Butlin RK (2019). Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. Molecular Ecology, Special Issue: The role of genomic structural variants in adaptation and diversification 28, 1375-1393.
Morales HE, Faria R, Johannesson K, Larsson T, Panova M, Westram AM, Butlin RK (2019). Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast. Science Advances 5, eaav9963.

2018

Meyer B, Hablützel PI, Roose AK, Hofmann MJ, Salzburger W & Raeymaekers JAM (2018). Linking parasites, trophic ecology, morphology and immunogenetics in the Lake Tanganyika cichlid radiation. Hydrobiologia.
Van Steenberge M, Raeymaekers JAM , Vanhove MPM, Koblmüller S & Snoeks J (2018). Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika. Frontiers in Zoology 15, 42.
Kmentová N, Van Steenberge M, Raeymaekers JAM, Koblmüller S, Hablützel PI, Muterezi Bukinga F, Mulimbwa N, Mulungula PM, Nzigidahera B, Ntakimazi G, Milan Gelnar M & Vanhove MPM (2018). Monogenean parasites of sardines in Lake Tanganyika: diversity, origin and intra-specific variability. Contributions to Zoology 87, 105-132.
Itescu Y, Schwarz R, Donihue CM, Slavenko A, Roussos SA, Sagonas K, Valakos ED, Foufopoulos J, Pafilis P, Meiri S (2018). Inconsistent patterns of body size evolution in co-occuring island reptiles. Global Ecology and Biogeography 27, 538-550.
Sagonas K, Valakos ED, Lymberakis P, Pafilis P (2018). Traits of reproduction and feeding of the european Green lizard, Lacerta viridis (Laurenti, 1768), at the southern edge of its distribution. Herpetozoa 30, 115-129.

2017

Raeymaekers JAM, Chaturvedi A, Hablützel PI, Verdonck I, Hellemans B, Maes GE, De Meester L & Volckaert FAM (2017). Adaptive and non-adaptive divergence in a common landscape. Nature Communications 8, 267.
Hablützel PI, Vanhove MPM, Deschepper P, Grégoir AF, Roose AK, Volckaert FAM & Raeymaekers JAM (2017). Parasite escape through trophic specialization in a species flock. Journal of Evolutionary Biology 30, 1437-1445.

2016

Abila R, Akoll P, Albertson C, Antunes D, Banda T, Bills R, Bulirani A, Chocha Manda A, Cohen A, Cunha-Saraiva F, Derycke S, Donohue I, Du M, Dudu AM, Egger B, Fritzsche K, Frommen JG, Gante HF, Genner MJ, Härer A, Hata H, Irvine K, Isumbisho Mwapu P, Janssens de Bisthoven L, Jungwirth A, Kaleme P, Katongo C, Kéver L, Koblmüller S, Konings A, Lamboj A, Lemmel-Schaedelin F, Machado Schiaffino G, Martens K, Masilya Mulungula P, Meyer A, More HL, Musilová Z, Muterezi Bukinga F, Muzumani DR, Ntakimazi G, Okello W, Phiri H, Piálek L, Plisnier PD, Raeymaekers JAM, Rajkov J, Říčan O, Roberts R, Salzburger W, Schoen I, Sefc KM, Singh P, Skelton P, Schneider K, Snoeks J, Sturmbauer C, Svardal H, Svensson O, Torres Dowdall J, Turner GF, Tyers A, van Rijssel JC, Van Steenberge M, Vanhove MPM, Verheyen E, Weber AT, Weyl O, Ziegelbecker A, Zimmermann H (2016). Oil extraction imperils Africa’s Great Lakes. Science 354, 561-562.
Vanhove MPM, Hablützel PI, Pariselle A, Šimková A, Huyse T & Raeymaekers JAM (2016). Cichlids: a host of opportunities for evolutionary parasitology. Trends in Parasitology 32, 820–832.
Chaves JA, Cooper EA, Hendry AP, Podos J, De León LF, Raeymaekers JAM, McMillan OW & Uy JAC (2016). Genomic variation at the tips of the adaptive radiation of Darwin’s finches. Molecular Ecology 25, 5282–5295.
Hablützel PI, Grégoir AF, Vanhove MPM, Volckaert FAM & Raeymaekers JAM (2016). Weak link between dispersal and parasite community differentiation or immunogenetic divergence in two sympatric cichlid fishes. Molecular Ecology 25, 5451–5466.

2015

Raeymaekers JAM & Backeljau T (2015). Recurrent adaptation in a low dispersal trait. Molecular Ecology 24, 699-701.
Vanhove MPM, Pariselle A, Van Steenberge M, Raeymaekers JAM, Hablützel PI, Gillardin C, Hellemans B, Breman FC, Koblmüller S, Sturmbauer C, Snoeks J, Volckaert FAM & Huyse T (2015). Hidden biodiversity in an ancient lake: phylogenetic congruence between Lake Tanganyika tropheine cichlids and their monogenean flatworms. Scientific Reports 5: 13669.
Konijnendijk N, Shikano T, Daneels D, Volckaert FAM & Raeymaekers JAM (2015). Signatures of selection in the three-spined stickleback along a small scale brackish water – freshwater transition zone. Ecology and Evolution5, 4174-4186.
Grégoir AF, Hablützel PI, Vanhove MPM, Pariselle A, Bamps J, Volckaert FAM & Raeymaekers JAM (2015). A link between host dispersal and parasite diversity in two sympatric cichlids of Lake Tanganyika. Freshwater Biology 60, 323-335.

2014

Hablützel PI, Vanhove MPM, Grégoir AF, Volckaert FAM & Raeymaekers JAM (2014). Intermediate number of major histocompatibility complex class IIB length variants relates to enlarged perivisceral fat deposits in the blunt-head cichlid Tropheus moorii. Journal of Evolutionary Biology 27, 2177–2190.
Mulimbwa N, Sarvala J & Raeymaekers JAM (2014). Reproductive activities of two zooplanktivorous clupeid fish in relation to the seasonal abundance of copepod prey in the northern end of Lake Tanganyika. Belgian Journal of Zoology 144, 77-92.
Chaturvedi A, Raeymaekers JAM & Volckaert FAM (2014). Computational identification of microRNAs, targets and their function in three-spined stickleback (Gasterosteus aculeatus). Molecular Ecology Resources 14, 768-777.
Van den Broeck F, Meurs L, Raeymaekers JAM, Boon N, Dieye TN, Volckaert FAM, Polman K & Huyse T (2014). Inbreeding within human Schistosoma mansoni: do host-specific factors shape the genetic composition of parasite populations? Heredity 113, 32–41.
Vandamme SG, Maes GE, Raeymaekers JAM, Cottenie K, Imsland AK, Hellemans B, Lacroix G, Mac Aoidh E, Martinsohn JT, Martínez P, Robbens J, Vilas R & Volckaert FAM (2014). Regional environmental pressure influences population differentiation in turbot (Scophthalmus maximus). Molecular Ecology 23, 618-636.
Mulimbwa N, Raeymaekers JAM & Sarvala J (2014). Seasonal changes in the pelagic catch of two clupeid zooplanktivores in relation to the abundance of copepod zooplankton in the northern end of Lake Tanganyika. Aquatic Ecosystem Health & Management 17, 25-33.
Raeymaekers JAM, Konijnendijk N, Larmuseau MHD, Hellemans B, De Meester L & Volckaert FAM (2014). A gene with major phenotypic effects as a target for selection versus homogenizing gene flow. Molecular Ecology 23, 162-181.

2013

Decaestecker E, De Gersem H, Michalakis Y & Raeymaekers JAM (2013). Damped long-term host-parasite Red Queen coevolutionary dynamics: a reflection of dilution effects? Ecology Letters 16, 1455-1462.
Hablützel PI, Hellemans B, Volckaert FAM & Raeymaekers JAM (2013). Differential modes of MHC class IIB gene evolution in cichlid fishes. Immunogenetics 65, 795-809.
Raeymaekers JAM, Hablützel PI, Grégoir AF, Bamps J, Roose AK, Vanhove MPM, Van Steenberge M, Pariselle A, Huyse T, Snoeks J & Volckaert FAM (2013). Contrasting parasite communities among allopatric colour morphs of the Lake Tanganyika cichlid Tropheus. BMC Evolutionary Biology 13, 41.
Konijnendijk N, Raeymaekers JAM, Vandeuren S, Jacquemin L & Volckaert FAM (2013). Testing for local adaptation in the Gasterosteus–Gyrodactylus host-parasite system. Evolutionary Ecology Research 15, 489–502.
Gotanda KM, Delaire LC, Raeymaekers JAM, Pérez-Jvostov F, Dargent F, Bentzen P, Scott ME, Fussmann GF & Hendry AP (2013). Adding parasites to the guppy-predation story: insights from field surveys. Oecologia 172, 155-166.
Maes GE, Raeymaekers JAM, Hellemans B, Geeraerts C, Parmentier K, De Temmerman L, Volckaert FAM & Belpaire C (2013). Gene transcription reflects poor health status of resident European eel chronically exposed to environmental pollutants. Aquatic Toxicology 126, 242-255.

2012

Raeymaekers JAM, Lens L, Van den Broeck F, Van Dongen S & Volckaert FAM (2012). Quantifying population structure on short timescales. Molecular Ecology 21, 3458-3473.
Larmuseau MHD, Ottoni C, Raeymaekers JAM, Vanderheyden N, Larmuseau HFM, Decorte R (2012). Temporal differentiation across a West-European Y-chromosomal cline – genealogy as a tool in human population genetics. European Journal of Human Genetics 20, 434-440.

2011

Raeymaekers JAM (2011). Modeling contemporary evolution in stickleback. Molecular Ecology 20, 2465-2467.
Anseeuw D, Raeymaekers JAM, Busselen P, Verheyen E & Snoeks J (2011). Low genetic and morphometric intraspecific divergence in peripheral Copadichromis populations (Perciformes: Cichlidae) in the Lake Malawi basin. International Journal of Evolutionary Biology.
Van Steenberge M, Vanhove MPM, Muzumani Risasi D, Mulimbwa N’Sibula T, Muterezi Bukinga F, Pariselle A, Gillardin C, Vreven E, Raeymaekers JAM, Huyse T, Volckaert FAM, Nshombo Muderwha V & Snoeks J (2011). A recent inventory of the fishes of the north-western and central western coast of Lake Tanganyika (Democratic Republic Congo). Acta Ichthyologica et Piscatoria 41, 201-214.
Berner D, Kaeuffer R, Grandchamp AC, Raeymaekers JAM, Räsänen K & Hendry AP (2011). Quantitative genetic inheritance of morphological divergence in a lake-stream stickleback ecotype pair: implications for reproductive isolation. Journal of Evolutionary Biology 24, 1975-1983.
De León LF, Raeymaekers JAM, Bermingham E, Podos J, Herrel A & Hendry AP (2011). Exploring possible human influences on the evolution of Darwin’s finches. Evolution 65, 2258-2272.
Raeymaekers JAM, Wegner KM, Huyse T, Volckaert FAM (2011). Infection dynamics of the monogenean parasite Gyrodactylus gasterostei on sympatric and allopatric populations of the three-spined stickleback Gasterosteus aculeatus. Folia Parasitologica 58, 27-34.

2010

Raeymaekers JAM, Boisjoly M, Delaire L, Berner D, Räsänen K & Hendry AP (2010). Testing for mating isolation between ecotypes: laboratory experiments with lake, stream and hybrid stickleback. Journal of Evolutionary Biology 23, 2694-2708.
Larmuseau MHD, Vancampenhout K, Raeymaekers JAM, Van Houdt JKJ, & Volckaert FAM (2010). Differential modes of selection on the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus. Molecular Ecology 19, 2256-2268.
Larmuseau MHD, Raeymaekers JAM, Hellemans B, Van Houdt JKJ & Volckaert FAM (2010). Mito-nuclear discordance in the degree of population differentiation in a marine goby. 105, 532-542.
Cuveliers EL, Geffen AJ, Guelinckx J, Raeymaekers JAM, Skadal J, Volckaert FAM & Maes GE (2010). Microchemical variation in juvenile Solea solea otoliths as a powerful tool for studying connectivity in the North Sea.

2009

Raeymaekers JAM, Delaire L & Hendry AP (2009). Genetically based differences in nest characteristics between lake, inlet, and hybrid threespine stickleback from the Misty system, British Columbia, Canada. Evolutionary Ecology Research 11, 905-919.
Van Dongen S, Lens L, Pape E, Volckaert FAM & Raeymaekers JAM (2009). Evolutionary history shapes the association between developmental instability and population-level genetic variation in three-spined sticklebacks. Journal of Evolutionary Biology 22, 1695-1707.
Larmuseau MHD, Raeymaekers JAM, Ruddick KG, Van Houdt JKJ & Volckaert FAM (2009). To see in different seas: spatial variation in the rhodopsin gene of the sand goby (Pomatoschistus minutus). Molecular Ecology 18, 4227-4239.
Raeymaekers JAM, Raeymaekers D, Koizumi I, Geldof S & Volckaert FAM (2009). Guidelines for restoring connectivity around water mills: a population genetic approach to the management of riverine fish. Journal of Applied Ecology 46, 562-571.
Geeraerts A, Raeymaekers JAM, Vinckier S, Pletsers A, Smets E & Huysmans S (2009). Systematic palynology in Ebenaceae with focus on Ebenoideae: morphological diversity and character evolution. Review of Palaeobotany and Palynology 153, 336-353.

2008

Raeymaekers JAM, Huyse T, Maelfait H, Hellemans B & Volckaert FAM (2008). Community structure, population structure and topographical specialisation of (Monogenea) ectoparasites living on sympatric stickleback species. Folia Parasitologica 55, 187-196.
Raeymaekers JAM, Maes GE, Geldof S, Hontis I, Nackaerts K & Volckaert FAM (2008). Modeling genetic connectivity in sticklebacks as a guideline for river restoration

2007

Decaestecker E, Gaba S, Raeymaekers JAM, Stoks R, Van Kerckhoven L, Ebert D & De Meester L (2007). Host–parasite ‘Red Queen’ dynamics archived in pond sediment. 450, 870-873.
Raeymaekers JAM, Van Houdt JKJ, Larmuseau MHD, Geldof S & Volckaert FAM (2007). Divergent selection as revealed by PST and QTL-based FST in three-spined stickleback (Gasterosteus aculeatus) populations along a coastal-inland gradient. Molecular Ecology 16, 891-905.

2006

Maes GE, Pujolar JM, Raeymaekers JAM, Dannewitz J & Volckaert FAM (2006). Microsatellite conservation and Bayesian individual assignment in four species. 251-261.

2005

Maes GE, Raeymaekers JAM, Pampoulie C, Seynaeve A, Goemans G, Belpaire C & Volckaert FAM (2005). The catadromous European eel Anguilla anguilla (L.) as a model for freshwater evolutionary ecotoxicology: Relationship between heavy metal bioaccumulation, condition and genetic variability. Aquatic toxicology 73, 99-114.
Raeymaekers JAM, Maes GE, Audenaert E & Volckaert FAM (2005). Detecting Holocene divergence in the anadromous-freshwater three-spined stickleback (Gasterosteus aculeatus) system. Molecular Ecology 14, 1001–1014.